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Article Dans Une Revue Bioinformatics Année : 2021

Panache: a Web Browser-Based Viewer for Linearized Pangenomes

Résumé

Motivation: Pangenomics evolved since its first applications on bacteria, extending from the study of genes for a given population to the study of all of its sequences available. While multiple methods are being developed to construct pangenomes in eukaryotic species there is still a gap for efficient and user-friendly visualization tools. Emerging graph representations comes with their own challenges, and linearity remains a suitable option for user-friendliness. Results: We introduce Panache, a tool for the visualization and exploration of linear representations of gene-based and sequence-based pangenomes. It uses a layout similar to genome browsers to display presence absence variations and additional tracks along a linear axis with a pangenomics perspective.
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Dates et versions

hal-03378164 , version 1 (14-10-2021)

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Citer

Éloi Durant, Francois Sabot, Matthieu Conte, Mathieu Rouard. Panache: a Web Browser-Based Viewer for Linearized Pangenomes. Bioinformatics, 2021, 37 (23), pp.4556-4558. ⟨10.1093/bioinformatics/btab688⟩. ⟨hal-03378164⟩
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